Package: divraster 1.0.4
divraster: Diversity Metrics Calculations for Rasterized Data
Alpha and beta diversity for taxonomic (TD), functional (FD), and phylogenetic (PD) dimensions based on rasters. Spatial and temporal beta diversity can be partitioned into replacement and richness difference components. It also calculates standardized effect size for FD and PD alpha diversity and the average individual traits across multilayer rasters. The layers of the raster represent species, while the cells represent communities. Methods details can be found at Cardoso et al. 2022 <https://CRAN.R-project.org/package=BAT> and Heming et al. 2023 <https://CRAN.R-project.org/package=SESraster>.
Authors:
divraster_1.0.4.tar.gz
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divraster.pdf |divraster.html✨
divraster/json (API)
NEWS
| # Install 'divraster' in R: |
| install.packages('divraster', repos = c('https://flaviomoc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/flaviomoc/divraster/issues
Pkgdown site:https://flaviomoc.github.io
Last updated 6 months agofrom:f1ade3501a. Checks:8 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Jan 26 2025 |
| R-4.5-win | OK | Jan 26 2025 |
| R-4.5-mac | OK | Jan 26 2025 |
| R-4.5-linux | OK | Jan 26 2025 |
| R-4.4-win | OK | Jan 26 2025 |
| R-4.4-mac | OK | Jan 26 2025 |
| R-4.3-win | OK | Jan 26 2025 |
| R-4.3-mac | OK | Jan 26 2025 |
Exports:area.calcdd.calcdiffer.rastload.dataspat.alphaspat.alpha2spat.betaspat.randspat.traitsuit.changetemp.beta
Dependencies:abindapeBATcaretclasscliclockclusterclusterGenerationcodacodetoolscolorspacecombinatcpp11crayondata.tableDEoptimdiagramdigestdoParalleldplyre1071expmfansifarverfastclusterfastmatchFNNforeachfuturefuture.applygenericsgeometryggplot2globalsgluegowergtablehardhathitandrunhmshypervolumeigraphipredisobanditeratorskernlabKernSmoothkslabelinglatticelavalifecyclelinproglistenvlpSolvelubridatemagicmagrittrmapsMASSMatrixmclustmgcvmnormtModelMetricsmulticoolmunsellmvtnormnlmenls2nnetnumDerivoptimParallelpalmerpenguinsparallellypbapplypdistpermutephangornphytoolspillarpkgconfigplyrpracmaprettyunitspROCprodlimprogressprogressrprotoproxypurrrquadprogR6rasterrcddRColorBrewerRcppRcppArmadilloRcppProgressrecipesreshape2rlangrpartscalesscatterplot3dSESrastershapespSQUAREMstringistringrsurvivalterratibbletidyrtidyselecttimechangetimeDatetzdbutf8vctrsveganviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Area calculation | area.calc |
| Function to calculate distance and direction of change between centroids | dd.calc |
| Difference between raster objects | differ.rast |
| Check if objects are valid | inputs_chk |
| Load data adapted from Mota et al. (2022), Tobias et al. (2022), and Jetz et al. (2014) | load.data |
| Area calculation | range.list |
| Area calculation | range.rast |
| Alpha calculation for raster | spat.alpha |
| Alpha calculation for vector | spat.alpha.vec |
| Alternative method to calculate alpha taxonomic diversity | spat.alpha2 |
| Spatial beta diversity for raster | spat.beta |
| Spatial beta diversity for vector | spat.beta.vec |
| Standardized Effect Size (SES) for raster | spat.rand |
| Average trait calculation for raster | spat.trait |
| Average trait calculation for vector | spat.trait.vec |
| Species suitability change between climate scenarios | suit.change |
| Temporal beta diversity calculation for raster | temp.beta |
| Temporal beta diversity calculation for vector | temp.beta.vec |
